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New detailed biome reconstructions are proposed in East Africa from modern pollen data derived from 150 sites located in northern Kenya (40 sites), north-western Uganda (51 sites) and southern Tanzania (59 new sites presented as pollen diagram), which are representative of the major vegetation associations occurring in seven phytogeographical regions, mosaics or centres of endemism. We use the standard biomisation method previously published for the African continent, but we reconsider the taxa assignment to plant functional types. We include in this approach all identified taxa (408) except aquatics, ferns and exotic taxa. The method is validated by comparison with local vegetation data and we show that 124 (82.6%) sites are assigned to the correct biome and that for all the biomes under investigation, the number of correct assignments always exceeds the number of incorrect ones. When an incorrect biome reconstruction occurs, mainly toward drier biomes, this is generally linked to the local open/degraded structure of the original vegetation or to the occurrence of a mosaic of open/closed vegetation. In turn, most of the reconstructions of more humid/closed biomes than the corresponding local vegetation (8.6%) remain unexplained. A comparison of our reconstructed biomes with the main East African vegetation types of White's map indicates that 121 (80.6%) sites are assigned to the correct biomes. However, the majority of sites are incorrectly reconstructed compared to Olson and IGBP maps from satellite data, mainly due to incorrect allocation of the land cover classes compared to the potential vegetation. The application of this method to our pollen data set demonstrates that modern pollen assemblages can successfully reconstruct the main modern East African vegetation types.